Science Enabled by Specimen Data
Bas, M., J. Ouled-Cheikh, L. Julià, A. Fuster-Alonso, D. March, F. Ramírez, L. Cardona, and M. Coll. 2024. Fish and tips: Historical and projected changes in commercial fish species’ habitat suitability in the Southern Hemisphere. Science of The Total Environment 948: 174752. https://doi.org/10.1016/j.scitotenv.2024.174752
Global warming has significantly altered fish distribution patterns in the ocean, shifting towards higher latitudes and deeper waters. This is particularly relevant in high-latitude marine ecosystems, where climate-driven environmental changes are occurring at higher rates than the global average. Species Distribution Models (SDMs) are increasingly being used for predicting distributional shifts in habitat suitability for marine species as a response to climate change. Here, we used SDMs to project habitat suitability changes for a range of high-latitude, pelagic and benthopelagic commercial fish species and crustaceans (10 species); from 1850 to two future climate change scenarios (SSP1–2.6: low climate forcing; and SSP5–8.5: high climate forcing). The study includes 11 Large Marine Ecosystems (LME) spanning South America, Southern Africa, Australia, and New Zealand. We identified declining and southward-shifting patterns in suitable habitat areas for most species, particularly under the SSP5–8.5 scenario and for some species such as Argentine hake (Merluccius hubbsi) in South America, or snoek (Thyrsites atun) off Southern Africa. Geographical constraints will likely result in species from Southern Africa, Australia, and New Zealand facing the most pronounced habitat losses due to rising sea surface temperatures (SST). In contrast, South American species might encounter greater opportunities for migrating southward. Additionally, the SSP5–8.5 scenario predicts that South America will be more environmentally stable compared to other regions. Overall, our findings suggest that the Patagonian shelf could serve as a climate refuge, due to higher environmental stability highlighting the importance of proactive management strategies in this area for species conservation. This study significantly contributes to fisheries and conservation management, providing valuable insights for future protection efforts in the Southern Hemisphere.
Ghazali, S. Z., S. Lavoué, T. Sukmono, A. Habib, M. P. Tan, and S. A. M. Nor. 2023. Cenozoic colonisation of the Indian Ocean region by the Australian freshwater-originating glassperch family Ambassidae (Teleostei). Molecular Phylogenetics and Evolution 186: 107832. https://doi.org/10.1016/j.ympev.2023.107832
We examined the phylogeny and biogeography of the glassperch family Ambassidae (Teleostei), which is widely distributed in the freshwater, brackish and marine coastal habitats across the Indo-West Pacific region. We first built a comprehensive time-calibrated phylogeny of Ambassidae using five genes. We then used this tree to reconstruct the evolution of the salinity preference and ancestral areas. Our results indicate that the two largest genera of Ambassidae, Ambassis and Parambassis, are each not monophyletic. The most recent common ancestor of Ambassidae was freshwater adapted and lived in Australia about 56 million years ago. Three independent freshwater-to-marine transitions are inferred, but no marine-to-freshwater ones. To explain the distribution of ambassids, we hypothesise two long-distance marine dispersal events from Australia. A first event was towards Southeast Asia during the early Cenozoic, followed by a second one towards Africa during mid-Cenozoic. The phylogenetic signal associated with the salinity adaptation of these events was not detected, possibly because of the selective extinction of intermediate marine lineages. The Ambassidae shares two characteristics with other freshwater fish groups distributed in continental regions surrounding the Indian Ocean: They are too young to support the hypothesis that their distribution is the result of the fragmentation of Gondwana, but they did not retain the phylogenetic signal of their marine dispersal.
Ramiro-Sánchez, B., A. Martin, and B. Leroy. 2023. The epitome of data paucity: Deep-sea habitats of the Southern Indian Ocean. Biological Conservation 283: 110096. https://doi.org/10.1016/j.biocon.2023.110096
Vulnerable marine ecosystems (VMEs) are protected from bottom-fishing impacts in international waters by UN resolutions through Regional Fishery Management Organizations. VMEs include deep-sea benthic taxa whose life-history traits make them vulnerable to disturbance. Conservation measures for VMEs require regulatory frameworks informed by biodiversity maps. Here we evaluate biogeographic patterns of VME biodiversity of the Southern Indian Ocean to understand conservation avenues for the Southern Indian Ocean Fisheries Agreement (SIOFA) management organization. We synthesised knowledge on the distribution of deep-sea benthic taxa and explored the quality and quantity of available data. Next, we explored how taxa are structured into bioregions using biogeographical networks. We found astounding Wallacean and Linnaean shortfalls within SIOFA's area, which is virtually devoid of distributional data. Across the entire area, results suggest that only 48 % of the expected deep-sea taxa has been sampled at most, and most sampled cells are inadequately sampled. Yet, our bioregionalization analysis identified multiple bioregions, some only observed within SIOFA's area. Whilst the Wallacean and Linnean shortfalls are so important for VMEs that they severely impede to make adequate maps for conservation planning, results suggest that SIOFA hosts a unique faunal composition that must be safeguarded. Predictive approaches to compensate for these shortfalls exist but will likely be insufficient and uncertain. Within SIOFA's area, there is no satisfying solution to cope with the data shortfalls. Yet, biodiversity maps are a global responsibility. This study makes a call to invest in biodiversity inventories in this region to promote informed conservation decisions.
Chaudhary, C., J. M. Alfaro-Lucas, M. V. P. Simões, A. Brandt, and H. Saeedi. 2023. Potential geographic shifts in the coral reef ecosystem under climate change. Progress in Oceanography 213: 103001. https://doi.org/10.1016/j.pocean.2023.103001
The coral reefs are the most diverse marine ecosystem in the world. Considering its contribution as a natural resource for humanity and global biodiversity, it is critical to understand its response to climatic change. To date, no global predictions have been made about potential ecosystem changes in relation to its inhabiting species. Predicting changes in species' climatic suitability under increasing temperature and comparing them among species would be the first step in understanding the geographic and taxonomic coherence and discrepancies that may occur within the ecosystem. Using 57 species-specific global climate suitability models (of corals, molluscs, fish, crustaceans, and polychaetes) under present and future climate scenarios (RCP 4.5 and 8.5), we compared the potential coherence and differences and their cumulative impact on the ecosystem in warm, cold, shallow, and deep waters.Under the climatic scenarios, nearly 90% of 30 warm-water species were predicted to lose their suitability in the parts of the Indo-west Pacific, the Coast of Northern Australia, the South China Sea, the Caribbean Sea, and the Gulf of Mexico, resulting in the overall southward shift in their distributions. In contrast, a mixed response occurred in 27 cold-water species, with most northern temperate/boreal ones increasing their suitability in the Arctic Ocean and the Arctic species declining overall. We noticed that irrespective of their taxonomic group, the species with wider distribution ranges (thermal and geographic) had larger predicted gains in their suitability than their stenothermal counterparts, suggesting an increase of generalist species and a decline of specialist (endemic) species of the ecosystem under a warming climate.Our coherent projections of species' climatic suitability in warm and cold habitats of the tropics, temperate, boreal, and the Arctic, represent significant taxonomic groups of the ecosystem. This might indicate mass extinction risk (local– in the tropics and northern temperate regions, and overall– in the Arctic) in native habitats and a high species turnover across the ecosystem under a warming climate. This may also destabilise predator–prey dynamics in the ecosystem, especially if foraging specialists dominate coral food webs and adversely affect the associated countries. Our global projections highlight the regions of species’ potential loss and gain; stakeholders could use the information to protect biodiversity and maintain human well-being.
Hausdorf, B. 2023. Distribution patterns of established alien land snail species in the Western Palaearctic Region. NeoBiota 81: 1–32. https://doi.org/10.3897/neobiota.81.96360
AbstractEstablished alien land snail species that were introduced into the Western Palaearctic Region from other regions and their spread in the Western Palaearctic are reviewed. Thirteen of the 22 species came from North America, three from Sub-Saharan Africa, two from the Australian region, three probably from the Oriental Region and one from South America. The establishment of outdoor populations of these species was usually first seen at the western or southern rims of the Western Palearctic. Within Europe, the alien species usually spread from south to north and from west to east. The latitudinal ranges of the alien species significantly increased with increasing time since the first record of introduction to the Western Palearctic. The latitudinal mid-points of the Western Palaearctic and native ranges of the species are significantly correlated when one outlier is omitted. There is a general trend of poleward shifts of the ranges of the species in the Western Palaearctic compared to their native ranges. There are three reasons for these shifts: (1) the northward expansion of some species in Western Europe facilitated by the oceanic climate, (2) the impediment to the colonisation of southern latitudes in the Western Palaearctic due to their aridity and (3) the establishment of tropical species in the Mediterranean and the Middle East. Most of the species are small, not carnivorous and unlikely to cause serious ecological or economic damage. In contrast, the recently introduced large veronicellid slugs from Sub-Saharan Africa and the giant African snail Lissachatinafulica could cause economic damage in irrigated agricultural areas or greenhouses in the Mediterranean and the Middle East.
Moreno, I., J. M. W. Gippet, L. Fumagalli, and P. J. Stephenson. 2022. Factors affecting the availability of data on East African wildlife: the monitoring needs of conservationists are not being met. Biodiversity and Conservation. https://doi.org/10.1007/s10531-022-02497-4
Understanding the status and abundance of species is essential for effective conservation decision-making. However, the availability of species data varies across space, taxonomic groups and data types. A case study was therefore conducted in a high biodiversity region—East Africa—to evaluate data biases, the factors influencing data availability, and the consequences for conservation. In each of the eleven target countries, priority animal species were identified as threatened species that are protected by national governments, international conventions or conservation NGOs. We assessed data gaps and biases in the IUCN Red List of Threatened Species, the Global Biodiversity Information Facility and the Living Planet Index. A survey of practitioners and decision makers was conducted to confirm and assess consequences of these biases on biodiversity conservation efforts. Our results showed data on species occurrence and population trends were available for a significantly higher proportion of vertebrates than invertebrates. We observed a geographical bias, with higher tourism income countries having more priority species and more species with data than lower tourism income countries. Conservationists surveyed felt that, of the 40 types of data investigated, those data that are most important to conservation projects are the most difficult to access. The main challenges to data accessibility are excessive expense, technological challenges, and a lack of resources to process and analyse data. With this information, practitioners and decision makers can prioritise how and where to fill gaps to improve data availability and use, and ensure biodiversity monitoring is improved and conservation impacts enhanced.
De Wysiecki, A., A. Irigoyen, F. Cortés, N. Bovcon, A. Milessi, N. Hozbor, M. Coller, and A. Jaureguizar. 2022. Population-scale habitat use by school sharks Galeorhinus galeus (Triakidae) in the Southwest Atlantic: insights from temporally explicit niche modelling and habitat associations. Marine Ecology Progress Series 697: 81–95. https://doi.org/10.3354/meps14146
Population-scale information on the spatial ecology of threatened mobile sharks is required to design more effective management measures. Using an exhaustive collection of presence-only records and relevant predictors, we applied temporally explicit environmental niche modelling to study habitat use by a school shark Galeorhinus galeus population in the Southwest Atlantic. As a complementary tool, we developed randomized habitat association curves to assess both the representation of data with biological information and possible intra-population variation in habitat use. Seasonal niche models supported a core area of distribution between southern Brazil and southern Argentina. Marginal seasonal variation in suitability at the northern and southern extremes of its distribution supported the hypothesis that the G. galeus population behaves to some degree as a niche shifter on an annual cycle. Habitat associations revealed regional bias in the collection of records with biological information, and suggested a complex intra-population segregation pattern between sexes and between maturity stages during the cold half of the year. Overall, results supported large-scale partial migrations (i.e. some individuals migrate while others remain resident) of the G. galeus population. This study demonstrates the significance of future regional efforts that focus on producing more and better databases to derive relevant information at a low cost for the management of threatened sharks and their relatives.
Kopperud, B. T., S. Lidgard, and L. H. Liow. 2022. Enhancing georeferenced biodiversity inventories: automated information extraction from literature records reveal the gaps. PeerJ 10: e13921. https://doi.org/10.7717/peerj.13921
We use natural language processing (NLP) to retrieve location data for cheilostome bryozoan species (text-mined occurrences (TMO)) in an automated procedure. We compare these results with data combined from two major public databases (DB): the Ocean Biodiversity Information System (OBIS), and the Global Biodiversity Information Facility (GBIF). Using DB and TMO data separately and in combination, we present latitudinal species richness curves using standard estimators (Chao2 and the Jackknife) and range-through approaches. Our combined DB and TMO species richness curves quantitatively document a bimodal global latitudinal diversity gradient for extant cheilostomes for the first time, with peaks in the temperate zones. A total of 79% of the georeferenced species we retrieved from TMO (N = 1,408) and DB (N = 4,549) are non-overlapping. Despite clear indications that global location data compiled for cheilostomes should be improved with concerted effort, our study supports the view that many marine latitudinal species richness patterns deviate from the canonical latitudinal diversity gradient (LDG). Moreover, combining online biodiversity databases with automated information retrieval from the published literature is a promising avenue for expanding taxon-location datasets.
Hanzen, C. C., M. C. Lucas, O. L. F. Weyl, S. M. Marr, G. O’Brien, and C. T. Downs. 2022. Slippery customers for conservation: Distribution and decline of anguillid eels in South Africa. Aquatic Conservation: Marine and Freshwater Ecosystems 32: 1277–1290. https://doi.org/10.1002/aqc.3823
Four anguillid eel species occur in the western Indian Ocean rivers of Africa: Anguilla bengalensis, Anguilla bicolor, Anguilla marmorata and Anguilla mossambica. These catadromous fishes face multiple stressors, including habitat alteration and deterioration, barriers to migration, pollution and the adverse impacts of alien species, but knowledge of eel species occurrence, abundance and ecology in Africa remains poor.This study investigated the present and historical distribution of anguillid eels and the potential associated drivers of declines at the southern extremities of their ranges in South Africa. Data analysed included sampling conducted in KwaZulu–Natal and Eastern Cape between 2015 and 2020, and secondary data extracted from databases, museums and local management agencies.The median extent of inland penetration increased as follows: 22 km for A. bicolor, 29 km for A. marmorata, 94 km for A. bengalensis and 293 km for A. mossambica. The median altitude followed a similar pattern.Extent of occurrence analyses were carried out at the regional level in KwaZulu–Natal. The sampling data on present distribution (2015–2020), compared with historical data, suggests declines in the extents of occurrence of the four eel species in KwaZulu–Natal, ranging between 31 and 48% in the last 30 years and between 35 and 82% since the 1950s.With increasing human threats in the region, especially from watercourse modification and water abstraction, further declines for these species are expected. Conservation measures recommended include the maintenance or restoration of the ecological connectivity of important rivers and the implementation of freshwater protected areas. Although eels are at present not widely exploited in South Africa, there is a need for fisheries regulations to manage sustainable commercial exploitation.
Strona, G., P. S. A. Beck, M. Cabeza, S. Fattorini, F. Guilhaumon, F. Micheli, S. Montano, et al. 2021. Ecological dependencies make remote reef fish communities most vulnerable to coral loss. Nature Communications 12. https://doi.org/10.1038/s41467-021-27440-z
Ecosystems face both local hazards, such as over-exploitation, and global hazards, such as climate change. Since the impact of local hazards attenuates with distance from humans, local extinction risk should decrease with remoteness, making faraway areas safe havens for biodiversity. However, isolat…